Wei Ouyang oeway

SAM for the BioEngine

Here are some files for converting SAM models to make it available in the BioEngine (local deployment: https://github.com/oeway/bioengine/).

The tree strcture for the model repository is like this:

├── sam-backbone
│ ├── 1

Hypha is a server software for creating computational platforms consists of computational and user interface components.

Hypha server act as a hub for connecting different components through imjoy-rpc.

pip install hypha

	<docs lang="markdown">
	[TODO: write documentation for this plugin.]
	</docs>

	<config lang="json">
	{
	"name": "React UI Plugin",
	"type": "window",
	"tags": [],
	"ui": "",

	<docs lang="markdown">
	[TODO: write documentation for this plugin.]
	</docs>

	<config lang="json">
	{
	"name": "stlite Demo",
	"type": "window",
	"tags": [],
	"ui": "",

	import asyncio
	import threading
	from concurrent.futures import ThreadPoolExecutor
	from imjoy_rpc.hypha import connect_to_server
	import time


	class BackgroundServer:
	def __init__(self, server_url):
	self.loop = None

	# pip install imjoy-rpc numpy qrcode[pil]
	# Code adopted from https://github.com/Khalil-Youssefi/qrcodeT/tree/master
	# Released under MIT license

	import qrcode
	import numpy as np

	def qrcode2text(img):
	bindata = np.array(img)[::10,::10] + 0
	if bindata.shape[0] % 2 != 0:

	"""
	This module is an example of a barebones QWidget plugin for napari

	It implements the Widget specification.
	see: https://napari.org/plugins/guides.html?#widgets

	Replace code below according to your needs.
	"""
	import asyncio
	from typing import TYPE_CHECKING

	<!DOCTYPE HTML>
	<html>
	<head>
	<meta charset="utf-8">
	<meta name="viewport" content="width=device-width,initial-scale=1">
	<title>ESP32 OV2460</title>
	<style>
	body{font-family:Arial,Helvetica,sans-serif;background:#181818;color:#EFEFEF;font-size:16px}h2{font-size:18px}section.main{display:flex}#menu,section.main{flex-direction:column}#menu{display:none;flex-wrap:nowrap;min-width:340px;background:#363636;padding:8px;border-radius:4px;margin-top:-10px;margin-right:10px}#content{display:flex;flex-wrap:wrap;align-items:stretch}figure{padding:0;margin:0;-webkit-margin-before:0;margin-block-start:0;-webkit-margin-after:0;margin-block-end:0;-webkit-margin-start:0;margin-inline-start:0;-webkit-margin-end:0;margin-inline-end:0}figure img{display:block;width:100%;height:auto;border-radius:4px;margin-top:8px}@media (min-width: 800px) and (orientation:landscape){#content{display:flex;flex-wrap:nowrap;align-items:stretch}figure img{display:block;max-width:100%;max-height:calc(10